A method of analyzing cell populations includes receiving, by a transceiver of a computing device, an image of a tissue sample. The method also includes analyzing, by a processor of the computing device, the image of the tissue sample using image analysis. The image analysis parameters are determined by machine learning. The method also includes determining, by the processor and based on the analyzing, one or more cell features, such as shape, of a cell in the tissue sample. The method further includes identifying, by the processor, an interaction of the cell with an additional cell based at least in part on the shape of the cell.