Published August 6, 2025 | Version v1
Journal article

Time-resolved atomic-resolution Brownian tomography of single nanocrystals reveals size-dependent dynamics

  • 1. National Cancer Institute
  • 2. University of Chicago
  • 3. Cornell University
  • 4. Institute for Basic Science
  • 5. Lawrence Berkeley National Laboratory
  • 6. University of Maryland

Description

Atomic-resolution structure identification of nanocrystals by graphene liquid cell electron microscopy (GLC-EM) has revealed that small, solubilized platinum nanocrystals consist of an ordered crystalline core surrounded by mobile surface atoms, which dissociate during oxidative etching, resulting in distinct temporal structural states. Requirements imposed by the 3D reconstruction algorithm limit the number of structural states that can be resolved. We introduce a regularized 3D reconstruction algorithm that exploits the redundancy inherent in the experimental data, allowing us to improve the time resolution. Our developments provide a comprehensive molecular picture at unprecedented spatial and temporal resolution of the nonlinear, linear, and fluctuating dynamic phenomena that single nanocrystals undergo during the GLC-EM experiment. We determined atomic structures of 66 temporal structural states, extracted from 15 time trajectories of individual nanocrystals. Large (478 to 698 atoms) and small (<300 atoms) nanocrystals show etching that preserves a stable core, whereas mid-sized (351 to 571 atoms) nanocrystals present dynamics that change the coordination of the core.

Data availability

The 3D density maps and atomic coordinates supporting our findings are available at https://zenodo.org/records/15531575. The software that was used in this study is available at https://zenodo.org/records/15594642. All other data needed to evaluate the conclusions of the paper are present in the paper and/or the Supplementary Materials.

Additional details

Identifiers

DOI
10.1126/sciadv.ady1413
Other
oai:uchicago.tind.io:16198

Funding

National Institutes of Health
U.S. Department of Energy
DE-AC02-05CH11231
National Research Foundation of Korea
RS-2024-00467226
Samsung Science and Technology Foundation
SSTF-BA2302-06
Institute for Basic Science
IBS-R006-D1
National Research Foundation of Korea
RS-2024-00449965
National Research Foundation of Korea
RS-2024-00421181

UChicago Information

Division(s)
Physical Sciences Division
Department(s)
Chemistry