Published July 23, 2018 | Version v1
Journal article Open

Gating mechanisms during Actin filament elongation by Formins

  • 1. University of Chicago
  • 2. University of Minnesota
  • 3. Yale University

Description

Formins play an important role in the polymerization of unbranched actin filaments, and particular formins slow elongation by 5-95%. We studied the interactions between actin and the FH2 domains of formins Cdc12, Bni1 and mDia1 to understand the factors underlying their different rates of polymerization. All-atom molecular dynamics simulations revealed two factors that influence actin filament elongation and correlate with the rates of elongation. First, FH2 domains can sterically block the addition of new actin subunits. Second, FH2 domains flatten the helical twist of the terminal actin subunits, making the end less favorable for subunit addition. Coarse-grained simulations over longer time scales support these conclusions. The simulations show that filaments spend time in states that either allow or block elongation. The rate of elongation is a time-average of the degree to which the formin compromises subunit addition rather than the formin-actin complex literally being in 'open' or 'closed' states.

Data availability

Some parts of data generated or analysed during this study are included in the manuscript and supporting files.

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Additional details

Identifiers

DOI
10.7554/eLife.37342
Other
oai:uchicago.tind.io:9899

Funding

National Science Foundation
Materials Research Science and Engineering Center
National Institute of General Medical Sciences
R01GM026338
National Institute of General Medical Sciences
R01GM122787

UChicago Information

Division(s)
Physical Sciences Division
Department(s)
Chemistry
Center(s) or Institute(s)
Institute for Biophysical Dynamics, James Franck Institute