Fuel processor for producing hydrogen from hydrocarbon fuels

A fuel processor having a dynamically controlled thermal integration mechanism and a method for dynamically controlling temperatures in a fuel processor. Such dynamic control accomplished by the use of an autothermal reformer, a steam/air superheater, water/air injectors, water gas shift reactors, heat exchangers, preferential oxidation reactors, wherein the feed/reactant streams are used as the coolant to remove heat from the reformate gas stream.