Published June 14, 2019 | Version v1
Journal article Open

Regional influences on community structure across the tropical-temperate divide

  • 1. University of Chicago
  • 2. Wildlife Institute of India

Description

Many models to explain the differences in the flora and fauna of tropical and temperate regions assume that whole clades are restricted to the tropics. We develop methods to assess the extent to which biotas are geographically discrete, and find that transition zones between regions occupied by tropical-associated or temperate-associated biotas are often narrow, suggesting a role for freezing temperatures in partitioning global biotas. Across the steepest tropical-temperate gradient in the world, that of the Himalaya, bird communities below and above the freezing line are largely populated by different tropical and temperate biotas with links to India and Southeast Asia, or to China respectively. The importance of the freezing line is retained when clades rather than species are considered, reflecting confinement of different clades to one or another climate zone. The reality of the sharp tropical-temperate boundary adds credence to the argument that exceptional species richness in the tropics reflects species accumulation over time, with limited transgressions of species and clades into the temperate.

Data availability

Local community bird surveys (species abundance data) and the phylogeny of all birds included in the study are all publicly available in the R package ecostructure. Species abundances in Himalayan communities are also provided in Supplementary Data 2. Species range polygons are available upon request from BirdLife International (http://datazone.birdlife.org/species/requestdis).

Code for fitting Grade of Membership models, analyzing motifs, and generating visualizations is publicly available in the new R package ecostructure. The package contains: (1) functions for processing local community data using a phylogeny to fit phylogenetic motifs, (2) functions for generating presence–absence matrices and dispersion fields from GIS data sources to fit species and geographical motifs, and (3) functions for visualizing the output of those model fits. Tools for null model comparisons and comparisons of geographical motifs with climatic data are also provided. The package, and a detailed vignette of its functionality, is available for download at https://kkdey.github.io/ecostructure.

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Regional-influences-on-community-structure-across-the-tropical-temperate-divide.pdf

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Additional details

Identifiers

DOI
10.1038/s41467-019-10253-6
Other
oai:uchicago.tind.io:5735

Funding

National Science Foundation
GAANN Quantitative Ecology Fellowship
National Geographic Society
National Science Foundation
GRFP
National Science Foundation
GRFP
National Institutes of Health
HG002585

UChicago Information

Division(s)
Biological Sciences Division, Physical Sciences Division
Department(s)
Ecology and Evolution, Human Genetics, Statistics