Regional influences on community structure across the tropical-temperate divide
Creators
- 1. University of Chicago
- 2. Wildlife Institute of India
Description
Data availability
Local community bird surveys (species abundance data) and the phylogeny of all birds included in the study are all publicly available in the R package ecostructure. Species abundances in Himalayan communities are also provided in Supplementary Data 2. Species range polygons are available upon request from BirdLife International (http://datazone.birdlife.org/species/requestdis).
Code for fitting Grade of Membership models, analyzing motifs, and generating visualizations is publicly available in the new R package ecostructure. The package contains: (1) functions for processing local community data using a phylogeny to fit phylogenetic motifs, (2) functions for generating presence–absence matrices and dispersion fields from GIS data sources to fit species and geographical motifs, and (3) functions for visualizing the output of those model fits. Tools for null model comparisons and comparisons of geographical motifs with climatic data are also provided. The package, and a detailed vignette of its functionality, is available for download at https://kkdey.github.io/ecostructure.
Files
Regional-influences-on-community-structure-across-the-tropical-temperate-divide.pdf
Files
(25.0 MB)
| Name | Size | Download all |
|---|---|---|
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Supplementary information md5:b06bbf49e2dde2190a901c20abd16e6a |
11.9 MB | Preview Download |
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Reporting summary md5:e2dc13546edc44df3ad17a55ed23642d |
74.4 kB | Preview Download |
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Description of additional supplementary files md5:589fef739d3eacb8505e22a97ee6d3a3 |
12.8 kB | Download |
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Supplementary data 1 md5:c6290fc527cca52795e309c989c24955 |
36.1 kB | Download |
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Supplementary data 2 md5:d591d2f1a56c567a14340a392e9bd190 |
67.2 kB | Download |
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Article md5:e35c1a32ae7525cfa2bdcd7881fe5fca |
12.9 MB | Preview Download |
Additional details
Identifiers
- DOI
- 10.1038/s41467-019-10253-6
- Other
- oai:uchicago.tind.io:5735
Funding
- National Science Foundation
- GAANN Quantitative Ecology Fellowship
- National Geographic Society
- National Science Foundation
- GRFP
- National Science Foundation
- GRFP
- National Institutes of Health
- HG002585