Published August 16, 2022 | Version v1
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Constraints on the evolution of toxin-resistant Na,K-ATPases have limited dependence on sequence divergence

  • 1. University of Nebraska
  • 2. University of Chicago
  • 3. Princeton University
  • 4. Universidad de los Andes
  • 5. Universität Hamburg
  • 6. Columbia University

Description

A growing body of theoretical and experimental evidence suggests that intramolecular epistasis is a major determinant of rates and patterns of protein evolution and imposes a substantial constraint on the evolution of novel protein functions. Here, we examine the role of intramolecular epistasis in the recurrent evolution of resistance to cardiotonic steroids (CTS) across tetrapods, which occurs via specific amino acid substitutions to the α-subunit family of Na,K-ATPases (ATP1A). After identifying a series of recurrent substitutions at two key sites of ATP1A that are predicted to confer CTS resistance in diverse tetrapods, we then performed protein engineering experiments to test the functional consequences of introducing these substitutions onto divergent species backgrounds. In line with previous results, we find that substitutions at these sites can have substantial background-dependent effects on CTS resistance. Globally, however, these substitutions also have pleiotropic effects that are consistent with additive rather than background-dependent effects. Moreover, the magnitude of a substitution's effect on activity does not depend on the overall extent of ATP1A sequence divergence between species. Our results suggest that epistatic constraints on the evolution of CTS-resistant forms of Na,K-ATPase likely depend on a small number of sites, with little dependence on overall levels of protein divergence. We propose that dependence on a limited number sites may account for the observation of convergent CTS resistance substitutions observed among taxa with highly divergent Na,K-ATPases (See S1 Text for Spanish translation).

Data availability

Data generated during this study are available as supplementary datasets and through data repository links provided in the Methods section. Plasmids used in this study have been deposited to Addgene (see S3 Table for names and Addgene ID numbers). Accession numbers for sequences used and generated in this study are available in S2 Dataset.

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Additional details

Identifiers

DOI
10.1371/journal.pgen.1010323
Other
oai:uchicago.tind.io:5876

Funding

National Institutes of Health
R01-GM115523
National Institutes of Health
R01-HL087216
National Institutes of Health
F32-HL149172
National Science Foundation
OIA-1736249
Deutsche Forschungsgemeinschaft
Do 517/10-1
Alexander von Humboldt Foundation, Humboldt Research Fellowship Programme for Postdocs

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Ecology and Evolution