Published December 5, 2025 | Version v1
Journal article

The structure of an actin nucleus stabilized by villin

  • 1. Vidyasirimedhi Institute of Science and Technology
  • 2. California State University Channel Islands
  • 3. University of Chicago
  • 4. Harvard University
  • 5. Sorbonne Université
  • 6. Duke-NUS Medical School

Description

Villin is an actin filament nucleating, severing, capping and bundling protein; however, the structural basis for villin's functions and the characteristics of the actin polymerization nucleus remain poorly understood. Here, we present the structure of vent-worm villin bound to a trimeric actin nucleus. Villin wraps around and caps the barbed end of the actin trimer. Its headpiece domain interacts at the junction of two laterally associated actin protomers, leaving the pointed-end subunits open for elongation. Within the actin trimer, the two longitudinally associated subunits adopt barbed and pointed-end subunit conformations, while the lateral protomer exhibits a monomeric conformation. This provides the first view of an actin-filament nucleus, revealing that the transition into the filamentous form is stimulated and stabilized by the interactions with the pointed-end subunits. Our results also illuminate mechanisms of actin-filament dynamics and villin capping and severing, suggesting that F-to-G actin conformational transitions facilitate the later process.

Data availability

All data needed to evaluate the conclusions in the paper are present in the paper and/or the Supplementary Materials. The atomic coordinates and structure factors have been deposited in the Protein Data Bank (https://www.rcsb.org/) under the accession IDs 9JUS, 9JW0, and 9JVT. Plasmids can be provided by R.C.R. pending scientific review and a completed material transfer agreement with VISTEC. Requests for the plasmids should be submitted to R.C.R. at robert.b@vistec.ac.th.

Additional details

Identifiers

DOI
10.1126/sciadv.adw6915
Other
oai:uchicago.tind.io:16749

Funding

Wellcome Trust
090532/Z/09/Z
Medical Research Council
G0900747 91070
International Human Frontier Science Program Organization
RGP0028/2018
Japan Society for the Promotion of Science
JP20H00476
Japan Science and Technology Agency
JPMJCR19S5
Simons Foundation
Eukaryotic Cell
University of Oxford
Next-Generation Sequencing Grant from the Nuffield Department of Medicine

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Medicine