Published January 2, 2025 | Version v1
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Programming scheduled self-assembly of circadian materials

Description

Active biological molecules present a powerful, yet largely untapped, opportunity to impart autonomous regulation of materials. Because these systems can function robustly to regulate when and where chemical reactions occur, they have the ability to bring complex, life-like behavior to synthetic materials. Here, we achieve this design feat by using functionalized circadian clock proteins, KaiB and KaiC, to engineer time-dependent crosslinking of colloids. The resulting material self-assembles with programmable kinetics, producing macroscopic changes in material properties, via molecular assembly of KaiB-KaiC complexes. We show that colloid crosslinking depends strictly on the phosphorylation state of KaiC, with kinetics that are synced with KaiB-KaiC complexing. Our microscopic image analyses and computational models indicate that the stability of colloidal super-structures depends sensitively on the number of Kai complexes per colloid connection. Consistent with our model predictions, a high concentration stabilizes the material against dissolution after a robust self-assembly phase, while a low concentration allows for oscillatory material structure. This work introduces the concept of harnessing biological timers to control synthetic materials; and, more generally, opens the door to using protein-based reaction networks to endow synthetic systems with life-like functional properties.

Data availability

The data generated in this study are provided in the Source Data file and have been deposited in the Zenodo database under accession code https://doi.org/10.5281/zenodo.14451964. Source data are provided with this paper.

The codes used for all simulations have been deposited in the Zenodo database under accession code https://doi.org/10.5281/zenodo.14451964. Analysis codes are provided on GitHub (see refs. 54,55,56).

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Additional details

Identifiers

DOI
10.1038/s41467-024-55645-5
Other
oai:uchicago.tind.io:14346

Funding

WM Keck Foundation Research
National Science Foundation
DMR-2119663
National Science Foundation
DMR-2118403
National Science Foundation
DMR-2118424
National Science Foundation
DMR-2118449
National Institutes of Health
R01 GM107369

UChicago Information

Division(s)
Biological Sciences Division
Department(s)
Biochemistry and Molecular Biology, Biophysical Sciences, Molecular Genetics and Cell Biology